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First seen after Apophis took control of Sokar's forces, the vessel possessed many advantages over the standard Ha'tak: it was larger, possessed a faster hyperdrive, had superior shields, and had weapons which could incinerate a Ha'tak in six shots bypassing his shields. (SG1: "The Serpent's Venom", "Enemies")
The mothership's interior was very dark, with gloomy candlelit hallways and a somewhat shadowy Pel'tak. This reflects the fact that it was originally Sokar's mothership and was taken by Apophis when he took over Sokar's forces. (SG1: "Exodus", "Enemies")
Apophis also took it and his fleet to Vorash in an attempt to destroy the Tok'ra. The supernova of Vorash's sun sent Apophis' mothership into another galaxy, along with SG-1. While there, the vessel was boarded by Replicators, who overran the ship, but Apophis set the self-destruct and escaped in a Tel'tak. The Replicators were unable to deactivate the self-destruct, and the ship was destroyed. (SG1: "Exodus", "Enemies")